PoplarV1, Main, Exploration, bibRecord, 000741

Regulation of Gene Expression of Methionine Sulfoxide Reductases and Their New Putative Roles in Plants.

Identifieur interne : 000741 ( Main/Exploration ); précédent : 000740; suivant : 000742

Regulation of Gene Expression of Methionine Sulfoxide Reductases and Their New Putative Roles in Plants.

Auteurs : Ewa M. Kalemba [Pologne] ; Ewelina Stolarska [Pologne]

Source :

International journal of molecular sciences [ 1422-0067 ] ; 2019.

RBID : pubmed:30875880

Descripteurs français

KwdFr :
- Analyse de profil d'expression de gènes (méthodes), Arabidopsis (enzymologie), Arabidopsis (génétique), Biologie informatique (méthodes), Facteurs de transcription (métabolisme), Gene Ontology (MeSH), Methionine Sulfoxide Reductases (génétique), Methionine Sulfoxide Reductases (métabolisme), Oryza (enzymologie), Oryza (génétique), Populus (enzymologie), Populus (génétique), Protéines végétales (génétique), Protéines végétales (métabolisme), Protéomique (méthodes), Régulation de l'expression des gènes végétaux (MeSH), Simulation numérique (MeSH).
MESH :
- enzymologie : Arabidopsis, Oryza, Populus.
- génétique : Arabidopsis, Methionine Sulfoxide Reductases, Oryza, Populus, Protéines végétales.
- métabolisme : Facteurs de transcription, Methionine Sulfoxide Reductases, Protéines végétales.
- méthodes : Analyse de profil d'expression de gènes, Biologie informatique, Protéomique.
- Gene Ontology, Régulation de l'expression des gènes végétaux, Simulation numérique.

English descriptors

KwdEn :
- Arabidopsis (enzymology), Arabidopsis (genetics), Computational Biology (methods), Computer Simulation (MeSH), Gene Expression Profiling (methods), Gene Expression Regulation, Plant (MeSH), Gene Ontology (MeSH), Methionine Sulfoxide Reductases (genetics), Methionine Sulfoxide Reductases (metabolism), Oryza (enzymology), Oryza (genetics), Plant Proteins (genetics), Plant Proteins (metabolism), Populus (enzymology), Populus (genetics), Proteomics (methods), Transcription Factors (metabolism).
MESH :
- chemical , genetics : Methionine Sulfoxide Reductases, Plant Proteins.
- enzymology : Arabidopsis, Oryza, Populus.
- genetics : Arabidopsis, Oryza, Populus.
- chemical , metabolism : Methionine Sulfoxide Reductases, Plant Proteins, Transcription Factors.
- methods : Computational Biology, Gene Expression Profiling, Proteomics.
- Computer Simulation, Gene Expression Regulation, Plant, Gene Ontology.

Abstract

Oxidation of methionine to methionine sulfoxide is a type of posttranslational modification reversed by methionine sulfoxide reductases (Msrs), which present an exceptionally high number of gene copies in plants. The side-form general antioxidant function-specific role of each Msr isoform has not been fully studied. Thirty homologous genes of Msr type A (MsrA) and type B (MsrB) that originate from the genomes of Arabidopsis thaliana, Populus trichocarpa, and Oryza sativa were analyzed in silico. From 109 to 201 transcription factors and responsive elements were predicted for each gene. Among the species, 220 and 190 common transcription factors and responsive elements were detected for the MsrA and MsrB isoforms, respectively. In a comparison of 14 MsrA and 16 MsrB genes, 424 transcription factors and responsive elements were reported in both types of genes, with almost ten times fewer unique elements. The transcription factors mainly comprised plant growth and development regulators, transcription factors important in stress responses with significant overrepresentation of the myeloblastosis viral oncogene homolog (MYB) and no apical meristem, Arabidopsis transcription activation factor and cup-shaped cotyledon (NAC) families and responsive elements sensitive to ethylene, jasmonate, sugar, and prolamine. Gene Ontology term-based functional classification revealed that cellular, metabolic, and developmental process terms and the response to stimulus term dominated in the biological process category. Available experimental transcriptomic and proteomic data, in combination with a set of predictions, gave coherent results validating this research. Thus, new manners Msr gene expression regulation, as well as new putative roles of Msrs, are proposed.

DOI: 10.3390/ijms20061309
PubMed: 30875880
PubMed Central: PMC6471524

Affiliations:

Pologne

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000990
to stream Main, to step Curation: 000990

Le document en format XML

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<front><div type="abstract" xml:lang="en">Oxidation of methionine to methionine sulfoxide is a type of posttranslational modification reversed by methionine sulfoxide reductases (Msrs), which present an exceptionally high number of gene copies in plants. The side-form general antioxidant function-specific role of each Msr isoform has not been fully studied. Thirty homologous genes of Msr type A (MsrA) and type B (MsrB) that originate from the genomes of <i>Arabidopsis thaliana</i>
, <i>Populus trichocarpa,</i>
 and <i>Oryza sativa</i>
 were analyzed in silico. From 109 to 201 transcription factors and responsive elements were predicted for each gene. Among the species, 220 and 190 common transcription factors and responsive elements were detected for the <i>MsrA</i>
 and <i>MsrB</i>
 isoforms, respectively. In a comparison of 14 <i>MsrA</i>
 and 16 <i>MsrB</i>
 genes, 424 transcription factors and responsive elements were reported in both types of genes, with almost ten times fewer unique elements. The transcription factors mainly comprised plant growth and development regulators, transcription factors important in stress responses with significant overrepresentation of the myeloblastosis viral oncogene homolog (MYB) and no apical meristem, Arabidopsis transcription activation factor and cup-shaped cotyledon (NAC) families and responsive elements sensitive to ethylene, jasmonate, sugar, and prolamine. Gene Ontology term-based functional classification revealed that cellular, metabolic, and developmental process terms and the response to stimulus term dominated in the biological process category. Available experimental transcriptomic and proteomic data, in combination with a set of predictions, gave coherent results validating this research. Thus, new manners <i>Msr</i>
 gene expression regulation, as well as new putative roles of Msrs, are proposed.</div>
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<Abstract><AbstractText>Oxidation of methionine to methionine sulfoxide is a type of posttranslational modification reversed by methionine sulfoxide reductases (Msrs), which present an exceptionally high number of gene copies in plants. The side-form general antioxidant function-specific role of each Msr isoform has not been fully studied. Thirty homologous genes of Msr type A (MsrA) and type B (MsrB) that originate from the genomes of <i>Arabidopsis thaliana</i>
, <i>Populus trichocarpa,</i>
 and <i>Oryza sativa</i>
 were analyzed in silico. From 109 to 201 transcription factors and responsive elements were predicted for each gene. Among the species, 220 and 190 common transcription factors and responsive elements were detected for the <i>MsrA</i>
 and <i>MsrB</i>
 isoforms, respectively. In a comparison of 14 <i>MsrA</i>
 and 16 <i>MsrB</i>
 genes, 424 transcription factors and responsive elements were reported in both types of genes, with almost ten times fewer unique elements. The transcription factors mainly comprised plant growth and development regulators, transcription factors important in stress responses with significant overrepresentation of the myeloblastosis viral oncogene homolog (MYB) and no apical meristem, Arabidopsis transcription activation factor and cup-shaped cotyledon (NAC) families and responsive elements sensitive to ethylene, jasmonate, sugar, and prolamine. Gene Ontology term-based functional classification revealed that cellular, metabolic, and developmental process terms and the response to stimulus term dominated in the biological process category. Available experimental transcriptomic and proteomic data, in combination with a set of predictions, gave coherent results validating this research. Thus, new manners <i>Msr</i>
 gene expression regulation, as well as new putative roles of Msrs, are proposed.</AbstractText>
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Regulation of Gene Expression of Methionine Sulfoxide Reductases and Their New Putative Roles in Plants.

Regulation of Gene Expression of Methionine Sulfoxide Reductases and Their New Putative Roles in Plants.

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